In this tutorial we will be adding DeepSpeed to the BingBert model for the SQuAD fine-tuning task, called “BingBertSquad” henceforth. We will also demonstrate performance gains.
If you don’t already have a copy of the DeepSpeed repository, please clone in now and checkout the DeepSpeedExamples submodule the contains the BingBertSquad example (DeepSpeedExamples/BingBertSquad) we will be going over in the rest of this tutorial.
git clone https://github.com/microsoft/DeepSpeed cd DeepSpeed git submodule update --init --recursive cd DeepSpeedExamples/BingBertSquad
You also need a pre-trained BERT model checkpoint from either DeepSpeed, HuggingFace, or TensorFlow to run the fine-tuning. Regarding the DeepSpeed model, we will use checkpoint 160 from the BERT pre-training tutorial.
- DeepSpeed-enabled: We provide a shell script that you can invoke to start training with DeepSpeed, it takes 4 arguments:
bash run_squad_deepspeed.sh <NUM_GPUS> <PATH_TO_CHECKPOINT> <PATH_TO_DATA_DIR> <PATH_TO_OUTPUT_DIR>. The first argument is the number of GPUs to train with, second argument is the path to the pre-training checkpoint, third is the path to training and validation sets (e.g., train-v1.1.json), and fourth is path to an output folder where the results will be saved. This script will invoke
- Unmodified baseline If you would like to run a non-DeepSpeed enabled version of fine-tuning we provide a shell script that takes the same arguments as the DeepSpeed one named
run_squad_baseline.sh. This script will invoke
The main part of training is done in
nvidia_run_squad_deepspeed.py, which has
already been modified to use DeepSpeed. The
helps to invoke training and setup several different hyperparameters relevant
to the training process. In the next few sections we will cover what changes we
made to the baseline in order to enable DeepSpeed, you don’t have to make these
changes yourself since we have already done them for you.
deepspeed_bsz24_config.json file gives the user the ability to specify DeepSpeed
options in terms of batch size, micro batch size, learning rate, and other parameters.
When running the
nvidia_run_squad_deepspeed.py, in addition to the
--deepspeed flag to enable DeepSpeed, the appropriate DeepSpeed configuration
file must be specified using
deepspeed_bsz24_config.json. Table 1 shows the fine-tuning configuration
used in our experiments.
|Total batch size||24|
|Train micro batch size per GPU||3|
Table 1. Fine-tuning configuration
The first step to apply DeepSpeed is adding arguments to BingBertSquad, using
deepspeed.add_config_arguments() in the beginning of the main entry point as in the
main() function in
nvidia_run_squad_deepspeed.py. The argument passed to
add_config_arguments() is obtained from the
get_argument_parser() function in utils.py.
parser = get_argument_parser() # Include DeepSpeed configuration arguments parser = deepspeed.add_config_arguments(parser) args = parser.parse_args()
Similar to this, all the options with their corresponding description are available in
DeepSpeed has an initialization function to wrap the model, optimizer, LR scheduler, and data loader. For BingBertSquad, we simply augment the baseline script with the initialize function to wrap the model and create the optimizer as follows:
model, optimizer, _, _ = deepspeed.initialize( args=args, model=model, model_parameters=optimizer_grouped_parameters )
This is identical in both Baseline and DeepSpeed, and is performed by
loss = model(input_ids, segment_ids, input_mask, start_positions, end_positions).
In the Baseline script you need to handle the all-reduce operation at the gradient accumulation boundary explicitly by using
enable_need_reduction() followed by
optimizer.backward(loss) in FP16 and
loss.backward() in FP32. In DeepSpeed, you may simply do
In the Baseline Script, you are required to explicitly specify the optimizer as
FusedAdam (along with the handling of dynamic loss scaling) in FP16 and
BertAdam in FP32, followed by the call
optimizer.zero_grad(). DeepSpeed handles this internally (by setting the
optimizer using the JSON config) when
initialize() is called and thus you
don’t need to explicitly write code but just do
Congratulations! Porting to DeepSpeed is complete.
Once training is complete, the EM and F1 scores may be obtained from the following command:
python evaluate-v1.1.py <PATH_TO_DATA_DIR>/dev-v1.1.json <PATH_TO_DATA_DIR>/predictions.json
The table summarizing the results are given below. In all cases (unless otherwise noted), the total batch size is set to 24 and training is conducted on 4 GPUs for 2 epochs on a DGX-2 node. A set of parameters (seeds and learning rates) were tried and the best ones were selected. All learning rates were 3e-5; We set the seeds to 9041 and 19068 for HuggingFace and TensorFlow models, respectively. The checkpoints used for each case are linked in the table below.
Enabling DeepSpeed’s Transformer Kernel for better Throughput
DeepSpeed’s optimized transformer kernel can be enabled during fine-tuning to increase the training throughput. In addition to supporting the models pre-trained with DeepSpeed, the kernel can be used with TensorFlow and HuggingFace checkpoints.
Enabling Transformer Kernel
--deepspeed_transformer_kernel is already created in
utils.py, we enable the transformer kernel by adding it in the shell script.
parser.add_argument( '--deepspeed_transformer_kernel', default=False, action='store_true', help='Use DeepSpeed transformer kernel to accelerate.' )
BertEncoder class of the modeling source file, DeepSpeed transformer kernel is created as below when it is enabled by using
if args.deepspeed_transformer_kernel: from deepspeed import DeepSpeedTransformerLayer, \ DeepSpeedTransformerConfig, DeepSpeedConfig ds_config = DeepSpeedConfig(args.deepspeed_config) cuda_config = DeepSpeedTransformerConfig( batch_size=ds_config.train_micro_batch_size_per_gpu, max_seq_length=args.max_seq_length, hidden_size=config.hidden_size, heads=config.num_attention_heads, attn_dropout_ratio=config.attention_probs_dropout_prob, hidden_dropout_ratio=config.hidden_dropout_prob, num_hidden_layers=config.num_hidden_layers, initializer_range=config.initializer_range, seed=args.seed, fp16=ds_config.fp16_enabled ) self.layer = nn.ModuleList([ copy.deepcopy(DeepSpeedTransformerLayer(i, cuda_config)) for i in range(config.num_hidden_layers) ]) else: layer = BertLayer(config) self.layer = nn.ModuleList([ copy.deepcopy(layer) for _ in range(config.num_hidden_layers) ])
All configuration settings come from the DeepSpeed configuration file and
command arguments and thus we must pass the
args variable to here in this model.
batch_size is the maximum bath size of input data, all fine-tuning
training data or prediction data shouldn’t exceed this threshold, otherwise it
will throw an exception. In the DeepSpeed configuration file micro batch size
is defined as
train_micro_batch_size_per_gpu, e.g., if it is set as 8 then
--predict_batch_size should also be 8.
Loading HuggingFace and TensorFlow Pretrained Models
BingBertSquad supports both HuggingFace and TensorFlow pretrained models. Here, we show the two model examples:
test/huggingfacewhich includes the checkpoint Bert-large-uncased-whole-word-masking and bert json config.
test/tensorflowwhich comes from a checkpoint zip from Google Bert-large-uncased-L-24_H-1024_A-16.
[test/huggingface] bert-large-uncased-whole-word-masking-config.json bert-large-uncased-whole-word-masking-pytorch_model.bin
[test/tensorflow] bert_config.json bert_model.ckpt.data-00000-of-00001 bert_model.ckpt.index bert_model.ckpt.meta
There are three arguments used for loading these two types of checkpoints.
--model_file, points to the pretrained model file.
--ckpt_type, indicates the checkpoint type,
HFfor HuggingFace, default value is
--origin_bert_config_file, points to the BERT config file, usually saved in same folder of
We can add the following in our fine-tuning shell script in
run_squad_deepspeed.sh to run the above HuggingFace and TensorFlow examples.
[HuggingFace] --model_file test/huggingface/bert-large-uncased-whole-word-masking-pytorch_model.bin \ --ckpt_type HF \ --origin_bert_config_file test/huggingface/bert-large-uncased-whole-word-masking-config.json \
[TensorFlow] --model_file /test/tensorflow/bert_model.ckpt \ --ckpt_type TF \ --origin_bert_config_file /test/tensorflow/bert_config.json \
--deepspeed_transformer_kernelflag is required for using HuggingFace or TensorFlow pretrained models.
--prelnflag cannot be used with HuggingFace or TensorFlow pretrained models, since they use a post-layer-norm.
BingBertSquad will check the pretrained models to have the same vocabulary size and won’t be able to run if there is any mismatch. We advise that you use a model checkpoint of the style described above or a DeepSpeed bing_bert checkpoint.
In order to perform fine-tuning, we set the total batch size to 24 as shown in Table 1. However, we can tune the micro-batch size per GPU to get high-performance training. In this regard, we have tried different micro-batch sizes on NVIDIA V100 using either 16GB or 32GB of memory. As Tables 2 and 3 show, we can improve performance by increasing the micro-batch. Compared with PyTorch, we can achieve up to 1.5x speedup for the 16GB V100 while supporting a 2x larger batch size per GPU. On the other hand, we can support as large as 32 batch size (2.6x higher than PyTorch) using a 32GB V100, while providing 1.3x speedup in the end-to-end fine-tune training. Note, that we use the best samples-per-second to compute speedup for the cases that PyTorch runs out-of-memory (OOM).
|Micro batch size||PyTorch||DeepSpeed||Speedup (x)|
Table 2. Samples/second for running SQuAD fine-tuning on NVIDIA V100 (16GB) using PyTorch and DeepSpeed transformer kernels.
|Micro batch size||PyTorch||DeepSpeed||Speedup (x)|
Table 3. Samples/second for running SQuAD fine-tuning on NVIDIA V100 (32GB) using PyTorch and DeepSpeed transformer kernels.
As mentioned, we can increase the micro-batch size per GPU from 3 to 24 or even higher if a larger batch size is desired. In order to support a larger micro-batch size, we may need to enable different memory-optimization flags for our transformer kernel as described in DeepSpeed Transformer Kernel tutorial. Table 4 shows which optimization flags are required for running different range of micro-batch sizes.
|Micro batch size||NVIDIA V100 (32-GB)||NVIDIA V100 (16-GB)|
Table 4. The setting of memory-optimization flags for a range of micro-batch size on 16-GB and 32-GB V100.
FineTuning model pre-trained with DeepSpeed Transformer Kernels
Fine-tuning the model pre-trained using DeepSpeed Transformer and the recipe in DeepSpeed Fast-Bert Training should yield F1 score of 90.5 and is expected to increase if you let the pre-training longer than suggested in the tutorial.
To get these results, we do require some tuning of the dropout settings as described below:
For the fine-tuning, we only use the deterministic transformer to have reproducible the fine-tuning results. But, we choose different values for dropout based on whether pre-training was done using deterministic or stochastic transformer (Please see Transformer tutorial for more detail of selecting these two modes).
For models pre-trained with deterministic transformer, we use the same dropout ratio used in pre-training (0.1). However, we slightly increase the dropout ratio when fine-tuning the model pre-trained using the stochastic transformer to compensate for the lack of stochastic noise during fine-tuning.
|Pre-training mode||Dropout ratio|
|Stochastic||0.12 - 0.14|